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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "OmicNavigator" in publications use:'
type: software
license: MIT
title: 'OmicNavigator: Open-Source Software for ''Omic'' Data Analysis and Visualization'
version: 1.14.2
doi: 10.1186/s12859-024-05743-4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.OmicNavigator
abstract: A tool for interactive exploration of the results from 'omics' experiments
  to facilitate novel discoveries from high-throughput biology. The software includes
  R functions for the 'bioinformatician' to deposit study metadata and the outputs
  from statistical analyses (e.g. differential expression, enrichment). These results
  are then exported to an interactive JavaScript dashboard that can be interrogated
  on the user's local machine or deployed online to be explored by collaborators.
  The dashboard includes 'sortable' tables, interactive plots including network visualization,
  and fine-grained filtering based on statistical significance.
authors:
- family-names: Ernst
  given-names: Terrence
- family-names: Blischak
  given-names: John
  email: jdblischak@gmail.com
  orcid: https://orcid.org/0000-0003-2634-9879
- family-names: Nordlund
  given-names: Paul
- family-names: Moore
  given-names: Justin
- family-names: Dalen
  given-names: Joe
- family-names: Bhamidipati
  given-names: Akshay
- family-names: Engelmann
  given-names: Brett
  email: brett.engelmann@abbvie.com
- family-names: Curado
  given-names: Marco
- family-names: LoGrasso
  given-names: Joe
preferred-citation:
  type: article
  title: 'OmicNavigator: open-source software for the exploration, visualization,
    and archival of omic studies'
  authors:
  - family-names: Ernst
    given-names: Terrence R
  - family-names: Blischak
    given-names: John D
  - family-names: Nordlund
    given-names: Paul
  - family-names: Dalen
    given-names: Joe
  - family-names: Moore
    given-names: Justin
  - family-names: Bhamidipati
    given-names: Akshay
  - family-names: Dwivedi
    given-names: Pankaj
  - family-names: LoGrasso
    given-names: Joe
  - family-names: Curado
    given-names: Marco Rocha
  - family-names: Engelmann
    given-names: Brett Warren
  journal: BMC Bioinformatics
  year: '2024'
  volume: '25'
  issue: '1'
  doi: 10.1186/s12859-024-05743-4
  start: '162'
repository: https://abbvie-external.r-universe.dev
repository-code: https://github.com/abbvie-external/OmicNavigator
commit: 84671da82bedf0b5ea2fddf3670c44886cdab8c5
url: https://github.com/abbvie-external/OmicNavigator
contact:
- family-names: Blischak
  given-names: John
  email: jdblischak@gmail.com
  orcid: https://orcid.org/0000-0003-2634-9879