Package: OmicNavigator 1.14.2
OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization
A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.
Authors:
OmicNavigator_1.14.2.tar.gz
OmicNavigator_1.14.2.zip(r-4.5)OmicNavigator_1.14.2.zip(r-4.4)OmicNavigator_1.14.2.zip(r-4.3)
OmicNavigator_1.14.2.tgz(r-4.4-any)OmicNavigator_1.14.2.tgz(r-4.3-any)
OmicNavigator_1.14.2.tar.gz(r-4.5-noble)OmicNavigator_1.14.2.tar.gz(r-4.4-noble)
OmicNavigator_1.14.2.tgz(r-4.4-emscripten)OmicNavigator_1.14.2.tgz(r-4.3-emscripten)
OmicNavigator.pdf |OmicNavigator.html✨
OmicNavigator/json (API)
NEWS
# Install 'OmicNavigator' in R: |
install.packages('OmicNavigator', repos = c('https://abbvie-external.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/abbvie-external/omicnavigator/issues
- Mm.c2 - Mm.c2 from Bioconductor workflow RNAseq123
- basal.vs.lp - Basal.vs.lp from Bioconductor workflow RNAseq123
- basal.vs.ml - Basal.vs.ml from Bioconductor workflow RNAseq123
- cam.BasalvsLP - Cam.BasalvsLP from Bioconductor workflow RNAseq123
- cam.BasalvsML - Cam.BasalvsML from Bioconductor workflow RNAseq123
- group - Group from Bioconductor workflow RNAseq123
- lane - Lane from Bioconductor workflow RNAseq123
- lcpm - Lcpm from Bioconductor workflow RNAseq123
- samplenames - Samplenames from Bioconductor workflow RNAseq123
bioinformaticsgenomicsomicsopencpu
Last updated 3 months agofrom:84671da82b. Checks:OK: 1 WARNING: 5 ERROR: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win | ERROR | Oct 27 2024 |
R-4.5-linux | WARNING | Oct 27 2024 |
R-4.4-win | WARNING | Oct 27 2024 |
R-4.4-mac | WARNING | Oct 27 2024 |
R-4.3-win | WARNING | Oct 27 2024 |
R-4.3-mac | WARNING | Oct 27 2024 |
Exports:addAnnotationsaddAssaysaddBarcodesaddEnrichmentsaddEnrichmentsLinkoutsaddFeaturesaddMappingaddMetaFeaturesaddMetaFeaturesLinkoutsaddModelsaddOverlapsaddPlotsaddReportsaddResultsaddResultsLinkoutsaddSamplesaddTestscombineStudiescreateStudyexportStudygetAnnotationsgetAssaysgetBarcodeDatagetBarcodesgetEnrichmentsgetEnrichmentsIntersectiongetEnrichmentsLinkoutsgetEnrichmentsNetworkgetEnrichmentsTablegetEnrichmentsUpsetgetFaviconsgetFeaturesgetInstalledStudiesgetLinkFeaturesgetMappinggetMetaFeaturesgetMetaFeaturesLinkoutsgetMetaFeaturesTablegetModelsgetNodeFeaturesgetOverlapsgetPackageVersiongetPlotsgetPlottingDatagetReportLinkgetReportsgetResultsgetResultsIntersectiongetResultsLinkoutsgetResultsTablegetResultsUpsetgetSamplesgetTestsgetUpsetColsimportStudyinstallAppinstallStudylistStudiesplotStudyremoveStudystartAppvalidateStudy
Dependencies:data.tablejsonlite